PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YB
Protein Properties Length: 175aa    MW: 18891.1 Da    PI: 7.5729
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017846genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.71.3e-5624118195
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl+kyre ++
  Cla017846  24 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDT 118
                69*****************************************************************************************9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-5419132IPR009072Histone-fold
SuperFamilySSF471131.71E-3927126IPR009072Histone-fold
PfamPF008082.1E-283094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.1E-217795No hitNo description
PRINTSPR006153.1E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MADAPASPGG GSHESGEQSP RSNVREQDRF LPIANISRIM KKALPANGKI AKDAKETVQE  60
CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMATLGFE DYIDPLKTYL TKYREGDTKG  120
SAKGGDASAK KEAHSTPISQ IAHQGSLSQG VNYASSQVLS LSLSLSQTLS NNNMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-4823115294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4823115294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG0038750.0HG003875.1 Cucumis sativus mRNA for nuclear transcription factor Y subunit B-8-like, cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295779.11e-112nuclear transcription factor Y subunit B-1
RefseqXP_008442638.11e-112PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2
RefseqXP_011651935.11e-112PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2
SwissprotQ8VYK45e-80NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLS6DEZ21e-112S6DEZ2_CUCSA; Nuclear transcription factor Y subunit B-8-like
STRINGGLYMA19G36220.21e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-80nuclear factor Y, subunit B8